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Home Privacy Policy Copyright and Trademark Information Contact Us Community Case Studies "Easy-to-Use" SNP & Variation Suite Assists John Curtin, PhD in Uncovering Genetic Associations for Asthma and Allergies For 10 Years Julia Pinsonneault, PhD Relies on SVS to Find Pharmacogenetic Associations for Central Nervous System Disorders Raman Babu, PhD Utilizes SVS to Handle Large Datasets with Quick Results Sander van der Laan Implements SVS for Greater Efficiency and Ease of Use Customers e-Newsletter Sign Up Past e-News Published Articles Our 2 SNPs...® Golden Helix blog Webcasts White Papers "Dammit Jim, I'm a doctor, not a bioinoformatician!" Hitchhiker's Guide to Next-Generation Sequencing Is Free Software Really Free? Request More Information Free Trial of SVS Download the SVS Viewer Request for Pricing and Information e-Newsletter Sign Up Register to Access Privileged Content Contact Us		Products SNP & Variation Suite SNP Analysis Package LD and Haplotype DNA-Seq Analysis Package Hitchhiker's Guide to Next-Generation Sequencing White Paper Video Demonstration CNV Analysis Package Power Seat PBAT Analysis SVS Core Plus Scripting SVS Viewer Agrigenomic Research Services Support Affymetrix Support Test Data 500k Case Control Response Zip Test Data 500k Continous Response Zip Test Data 100k Case Control Response Zip Test Data Case Control 2880 Patients 100k Zip Test Data 100k Continous Response Zip Raw 50K hind CHP Files Zip Raw 50K xba CHP Files Zip Raw 250K nsp CHP Files Zip 250K sty CHP Files Zip 5.0 Annotation File 6.0 Annotation File 5.0 Library File 6.0 Library File Illumina Support Golden Helix GenomeStudio DSF Plugin Golden Helix BeadStudio DSF Plugin

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• Add-On Scripts Repository for SVS 7.4+
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  • Bioinformatics Filtering
  • Comparing Copy Number Variations Between Tumors and Normals Using the Affymetrix MIP Array
  • Copy Number Variation (CNV) PCA Search Tutorial
  • Copy Number Variation (CNV) - Quality Assurance
  • Copy Number Variation (CNV) Univariate Analysis
  • Creating a Genome Map
  • Family-Based Analysis
  • Importing and Merging Data
  • LD and Haplotype Analysis
  • NGS Family Analysis
  • Quantitative Haplotype Association and Haplotype Trend Regression
  • Recalling Genotypes with BEAGLECALL
  • Regression with Covariates
  • Runs of Homozygosity Analysis
  • SNP Analysis
  • Variant Data Import and Analysis
  • Video Tutorial: Genome-Wide SNP Association Tutorial
  • Video Tutorial: Genetic Association in Complex Disease
    • Dataset for tutorial
    • Handout
  • Video Tutorial: Quantitative Haplotype Association and Haplotype Regression
  
  
  
• Webcasts
  • Achieving Genome-Wide Success in SNP and CNV Studies    
    Abstract  |  Stream  |  Download  |  Slides  |  Transcript
  • Achieving Genome-Wide Success Part 2: Study Design in SNP and CNV Studies
    Abstract  |  Stream  |  Download  |  Slides  |  Transcript
  • Achieving Genome-Wide Success Part 3: Quality Assurance and Data Prep in SNP and CNV Studies
    Abstract  |  Stream  |  Download  |  Slides  |  Transcript
  • ASHG 2009: Achieving Genome-Wide Success from SNPs to CNVs to eQTL
    Abstract  |  Stream  |  Download  |  Slides  |  Transcript
  • ASHG 2010: Improving the Power of Your Study with Advanced Genotype Calling, Imputation, and Next-Generation Sequencing
    Abstract  |  Stream  |  Download  |  Slides  |  Transcript  |  About ASHG 2010
    • Survey Results from ASHG 2010
  • ASHG 2011: Effectively Deriving Meaning from DNA Resequencing Variant Analysis
    Abstract  |  Stream  |  Download  |  Slides  |  About ASHG 2011
  • ASHG 2011: Optimization of Illumina mRNA-Seq Experimental Results and Conversion to a User Friendly Analysis Solution
    Abstract  |  Stream  |  Download  |  Slides  |  About ASHG 2011
  • Common Genetic Variants Modulate Nicotinic Alpha5 Receptor mRNA Expression and Risk for Nicotine Dependence
    Abstract  |  Stream  |  Download  |  Slides  |  Transcript
  • CSCDA Conference Presentation: Design and Analysis of GWAS using CNVs    
    Abstract  |  Stream  |  Download  |  Slides
  • CSCDA Conference Presentation: Genotype Calling and Imputation with BEAGLE and BEAGLECALL
    Abstract  |  Stream  |  Download  |  Slides
    • Advanced Genotyping & Imputation Whitepaper
  • Emerging Methods in Whole Genome CNV Association     
    Abstract  |  Stream  |  Download  |  Slides  |  Transcript
  • First Look at SVS 7.4     
    Abstract  |  Stream  |  Download  |  Slides
    • New Features by Module
  • First Look at SVS 7.5     
    Abstract  |  Stream  |  Download  |  Slides
  • Genome-Wide Association Analysis Reveals Putative Alzheimer's Disease Susceptibility Loci in Addition to APOE
    Abstract  |  Stream  |  Download  |  Slides  |  Transcript
  • Genome Wide SNP and CNV Association Studies Identify Genetic Factors for Lung Cancer
    Abstract  |  Stream  |  Download  |  Slides  |  Transcript
  • IGES 2008 Talk: Methods and Discoveries Drawn from 20 Whole Genome Copy Number Variation Studies
    Abstract  |  Stream  |  Download
  • IGES 2009: Overcoming Data Quality and Copy Number Detection Issues in Genome-Wide CNV Association Studies
    Abstract  |  Stream  |  Download  |  Slides  |  Transcript
  • IGES 2010: Combining Next-Gen Sequencing and SNP Microarray Data Using Imputation
    Abstract  |  Stream  |  Download  |  Slides
    • Survey Results from IGES 2010
  • Introducing SVS 7.3    
    Abstract  |  Stream  |  Download  |  Slides
  • Introduction to SNP & Variation Suite 7    
    Abstract  |  Stream  |  Download
  • JSM 2009: Overcoming data quality and copy number detection issues in genome-wide CNV association studies
    Abstract  |  Stream  |  Download  |  Slides
  • Learning From Our GWAS Mistakes: From experimental design to scientific method 
    Abstract  |  Stream  |  Download  |  Slides
  • Next-Gen Sequencing Workshop: How to Effectively Derive Meaning from DNA Variant Data     
    Abstract  |  Stream  |  Download  |  Slides
  • On the Analysis of Copy-Number Variations in Genome-Wide Association Studies: A Translation of the Family-Based Association Test
    Abstract  |  Stream  |  Download
  • On the Replication of Genetic Associations: Timing Can Be Everything    
    Abstract  |  Stream  |  Download
  • Sequence Variant Analysis with Golden Helix SNP & Variation Suite    
    Abstract  |  Stream  |  Download  |  Slides
  • SNP, ROH and CNV Association Analysis Overview with Affymetrix SNP Arrays 5.0 and 6.0    
    Abstract  |  Stream  |  Download
  • Speeding Up the Hunt for Causal Trait Mutations in Cattle and Other Agrigenomic Species    
    Abstract  |  Stream  |  Download  |  Slides  |  Transcript
  • Using Runs of Homozygosity to Identify Recessive Loci    
    Abstract  |  Stream  |  Download
  • Whole Genome Association Study of Schizophrenia    
    Abstract  |  Stream  |  Download
  • Whole Genome Copy Number Association Analysis with Golden Helix    
    Abstract  |  Stream  |  Download

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  • Golden Helix in the News
  • Press Releases
    • Expression Analysis and Golden Helix Overcome Barriers to RNA-Seq Adoption with Streamlined, Cloud-Based Analytic Solution
    • Golden Helix Announces Launch of SNP & Variation Suite 7.5
    • Baylor College of Medicine and Golden Helix Collaborate to Put Better Rare Variant Analysis into the Hands of Researchers
    • Cancer Center Licenses SNP & Variation Suite to Continue Performing Innovative Epidemiologic Research
    • Golden Helix Debuts First Integrated Toolset for NGS Variant Analysis
    • Golden Helix Harnesses the Power of GPUs to Accelerate Genomic Analyses
    • Sirius Genomics and Golden Helix Collaborate on Companion Diagnostic Development
    • Harvard School of Public Health Steps Up Collaboration with Golden Helix on Bioinformatics Development
    • Golden Helix Partners with CloudScientific to Provide Genetic Analysis Software in China
    • Golden Helix Brings High-Performance Analytics to a Broader Community
    • Golden Helix Taps Millennium Science to Distribute GWAS and CNV Software
    • Golden Helix Offers Assistance For Rosetta Syllego Users
    • Golden Helix and Agilent Team Up to Enhance Large Scale CNV Studies
    • Golden Helix and Spinco Biotech Reach Distribution Agreement for India
    • Golden Helix Launches SVS 7 to Advance Next Generation Analysis
    • Harvard School of Public Health Using Golden Helix Software for Graduate Biostatistics
    • US Centers for Disease Control and Prevention expands Golden Helix License
    • Golden Helix Expands Copy Number Collaboration Program; Signs Five Additional Institutions
    • Golden Helix Software Used to Develop Novel DNA Microarray Chip for Rheumatoid Arthritis Prediction
    • Golden Helix CEO to Co-Chair MAQC's Copy Number Variation Data Analysis Team
    • Whole Genome Association Studies Find Success in Lung Cancer and Obesity Research
    • Golden Helix to Award Scholarship for Harvard FBAT-PBAT Short Course
    • Golden Helix Launches Copy Number Collaboration Program; Signs Six Academic Institutions as Inaugural Partners
    • GlaxoSmithKline Renews Worldwide Site License for Golden Helix's Genetic Association Software
    • Golden Helix and Progeny Announce Collaboration to Develop Genetic Data Management and Analysis Solution
    • New Association Method Uncovers Nine Genetic Risk Factors Associated with Schizophrenia
    • Breakthrough Software Released for Whole Genome Copy Number Association Studies
    • GlaxoSmithKline and NIEHS Researchers use HelixTree's Recursive Partitioning for Pharmacogenetic Research
    • Golden Helix Becomes Charter Member of Illumina Connect Program
    • Golden Helix Releases v5.3 of HelixTree
    • Researchers Use HelixTree® in First Successful Whole Genome Association Study Published for a Psychiatric Illness
    • Golden Helix and United Devices Announce Collaboration to Grid-Enable Genetic Analysis, Drug Discovery Software
    • Golden Helix Releases v5.2 of HelixTree
    • Harvard University Grants Golden Helix, Inc. Exclusive License to PBAT
    • Golden Helix Software Achieves GeneChip-compatible™ Status with Affymetrix Microarray Platform
    • Golden Helix Releases v4.0 of HelixTree
    • Golden Helix Releases ChemTree Drug Discovery Software for Mac OS X
    • Golden Helix Releases HelixTree Genetics Analysis Software for Mac OS X
    • Golden Helix Signs Agreement with DigiGenomics Co., Ltd. to Market HelixTree and ChemTree Software in Taiwan
    • Golden Helix Awarded $70K Phase I DoD STTR Grant
    • ChemTree and HelixTree are ported to IBM's AIX 5L OS
    • Golden Helix Awarded $750K Phase II SBIR Grant: "Software Relating Genes to Disease and Clinical Outcomes"
    • Golden Helix Announces New Release of ChemTree Chemoinformatics Software
    • Golden Helix Announces Upgrade to ChemTree That Significantly Enhances Drug Discovery Power
    • Golden Helix Signs Agreement with INTEC W&G Informatics Co to Market Software in Japan
    • GlaxoSmithKline Invests in Golden Helix, Inc. to Bring the Genetics Revolution to the Practice of Medicine
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