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Python is a clear and powerful object-oriented programming language, comparable to Perl, Ruby, Scheme, or Java. Integrating Python into SVS 7 provides full programmatic access to many of the software's features enabling the augmentation of existing tools, creating entirely new ones, automation of work flows, integration with other programs and more.

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» SVS 7 Scripting Reference
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CMH Test over Several Strata

Author: Autumn Laughbaum, Golden Helix

This script is designed to calculate Cochran-Mantel-Haenszel statistics, given several different spreadsheets corresponding to data from several different strata. Each spreadsheet must have one binary dependent column and several genotypic columns. Individual genotype associations test are computed for each strata, then the appropriate cell counts are calculated based on the genetic model selected.

	CMH Test over Several Strata.py
	Documentation

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Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\SVS\Tools

Note: The Application Data folder is a hidden folder on Windows operating systems and its location varies between XP and Vista. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the project navigator's Tools menu.