What is Python?

Python is a clear and powerful object-oriented programming language, comparable to Perl, Ruby, Scheme, or Java. Integrating Python into SVS 7 provides full programmatic access to many of the software's features enabling the augmentation of existing tools, creating entirely new ones, automation of work flows, integration with other programs and more.

BEAGLE/BEAGLECALL Scripts Package

Author: Various GHI Staff

These scripts are for importing and exporting files from the BEAGLE and BEAGLECALL Genetic Analysis Software Packages

Name	Script		Documentation
Import BEAGLE		Script		Documentation
Import BEAGLE gprobs as Allelic Dosage		Script		Documentation
Export BEAGLE File		Script		Documentation
Export BEAGLE Marker File by Chromosome		Script		Documentation
Export BEAGLE by Chromosome		Script		Documentation
Export BEAGLECALL Genotype Probabilities		Script		Documentation
Export BEAGLECALL Allele Signals		Script		Documentation
Zip file of all BEAGLE/BEAGLECALL Scripts		ALL Scripts and Documentation (Zip file)

Recommended Directory Location

Need a Custom Script?

Need a script and don't feel you have the bioinformatics exptertise to write it yourself? Click the link below to request a custom script and we'll see what we can do to help.

» Request Custom Script

Import Script
Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\SVS\Import

Note: Note: The Application Data folder is a hidden folder on Windows operating systems and its location varies between XP and Vista. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the project navigator Import menu.

Export Scripts
Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\Spreadsheet\File

Note: Note: The Application Data folder is a hidden folder on Windows operating systems and its location varies between XP and Vista. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the spreadsheet File menu