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- Installing and Initializing
- Understanding the Interface and Workflow
- Importing Your Data Into A Project
- Genetic Marker Maps and Affymetrix Library Files
- Genetic Marker Maps Overview
- Convert Text File into Marker Map DSM Format
- Download from Golden Helix, Inc.
- Download Affymetrix Annotation Files
- Managing the MarkerMaps Folder
- Applying a Genetic Marker Map to a Spreadsheet
- Exporting an Applied Genetic Marker Map to a DSM file
- Downloading Affymetrix Library (CDF) Files
- Spreadsheets
- Scripting and Other Integrated Statistical Tools
- Data Quality Assessment
- Quality Assurance Overview
- Quality Assurance Procedures
- Genotype Statistics by Marker
- Genotype Filtering by Marker
- Genotype Statistics by Sample
- PBAT Family-Based QC Statistics
- Principal Component Analysis Overview
- Genotypic Principal Component Analysis
- Numeric Principal Component Analysis
- Correcting for Stratification by Genomic Control
- Identity by Descent Estimation
- Inbreeding Coefficients
- LD Pruning
- Wave Detection and Correction
- Analysis
- PBAT Family-Based Analysis
- Copy Number Analysis
- Sequence Analysis
- Visualizing Data
- Genome Browser
- Export Options for Data and Plots
- Formulas and Theories: The Science Behind SNP and Variation Suite
- Appendices
- EULA
- Installing the Third-Party Condor ®
- Extracting Affymetrix Copy Number Data for use in SVS
- Exporting Data from GenomeStudio
- Platform Notes
- Hardware Acceleration
- A Glossary of Terms Used in Genetic Analysis
- References
Installing Condor®Overview
17.1 Installing Condor®Overview
Condor® is a freely available, specialized, batch system for managing compute-intensive jobs on a distributed network
environment.
This chapter will provide a step-by-step guide to installing Condor® on Windows systems connected through a LAN.
Although Condor® is cross-platform, this chapter will focus on installing Condor® through the Windows installation
wizard.
Documentation on Condor® installation on other platforms and security concerns can be found on Condor®s website at http://www.cs.wisc.edu/condor/.